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The Genomics Language Toolkit

A resource to assist genomic data scientists with reviewing the way language is reviewed and used in genomics, escpecially with terms that also have a socio-political meaning?


Client: Genomics England (in house)

Duration: 1 year (2022)

Topic: Race, Ethnicity and Ancestry in Genomics



The Brief


Langauge is always changing and context specific. ... but when we’re dealing with genomics, it’s essential to understand when context switching causes bias, unclear science and siloes in problem solving. This is particularly true for words relating to race, ethnicity and ancstry in genomics.


The Outcome

  • A Digital toolkit with co-created definitions with a range of experts (Doctors, genetic councillors, bioinformaticians, activists, patients and social scientists). Hosted on Notion so it can be easily updated.

  • Printed booklet version of the document to exist in physical spaces in the office.

  • Educational video content and posters used to onboard new staff, in a range of formats which account for different levels of scientific understanding

  • A review panel set up annually with the collaborators to update terminology


Download the Quick Guides


Johns Hopkins Lecture _ Lacnguage Toolkit_ Sophia Luu
.pdf
Download PDF • 8.01MB
Ancestry Race Ethnicity-quickguidevf
.pdf
Download PDF • 259KB

Research and Methodology


Over the course of 5 months, I held 18 in-depth sessions with: 5 patient advocacy groups, 5 researchers (science and social), 5 population geneticists/ bioinformaticians, 3 clinicians and genetics counsellors. A lot of careful planning and ethical consideration was taken into thinking about the responsibility of communicating the histroy of eugenics in genetics, and the way we could keep participants safe when holding such personal and scientific discussions.


Key Insights


Many of the traditional terms used to define race, ancestry and ethnicity in genomics are outdated and unscientific. While there is a recognition from genomic experts that this is the case for socio-political terminology, there is less of an understanding of how these sentiments can cause assumptions that affect genetic science. Gentetics experts tend to 'codeswitch' when using words relating to race, ancestry and ethnicity in a social or scientific context, which is dangerous as these contexts are never fully defined.


The Team


  • Sophia Luu - Project lead and Design Research

  • Semine Long-Callesen, History of Science Researcher

  • Dr Sam Tallman - Genomic Data Scientist

  • Dr Ed Hollox - Genomic Data Scientist

  • Mahantesh Biradar, M.Tech - Genetic Epidemiology and Research Fellow

  • Dr. Anna Need - Human Geneticist

  • Amanda Pichini -Genetic Counsellor

  • Lyra Nightingale - Ethics Lead

  • Aman Ali - Community Organiser, Muslim Engagement and Development

  • Dr Furaha Asani - Public Scholar and Writer

  • Dr Sasha Henriques - Principal Genetic Counsellor

  • Salim and Hasha Shaikh, Summaiya - Research & Projects Directors, Smartlyte/ Get Families Talking

  • Dr Alice Popejoy - Reseacher

  • Ewan Birney - Director General

  • Dr Matteo Fumagalli, Clinician

  • Melanie Martin, Copywrityer

  • Dr Daniel Rhodes - Senior Bioinformatician

  • Dr Maxine Mackintosh - Diverse Data programme lead

  • Thuy Nguyen - Senior Bioinformatician

  • Diksha Srivastava - Policy lead





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